Project Name: Biological ABM simulation FPGA acceleration ------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------ Project Area: Bacteria/Cells FPGA acceleration ------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------ Target: None Yet ------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------ People Needs and Allocation: Depends ------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------ Skills: Programming, FPGA ------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------ Description: The goal of this work is to build a tool to map biological simulations as ABMs and map them to FPGAs. ------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------ References: - Modeling oscillations and spiral waves in Dictyostelium populations Javad Noorbakhsh,1 David J. Schwab,2,3,* Allyson E. Sgro,2,3 Thomas Gregor,2,3 and Pankaj Mehta1 - Identifying control mechanisms of granuloma formation during M. tuberculosis infection using an agent-based model Jose L. Segovia-Juarez1 , Suman Ganguli1 , Denise Kirschner ------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------ Resources: